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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004150
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAGACTTTCTGGCATTGCCT
miRNA*
GCAATGCTAGAAAGTCTTATA
mismatches:
0
bulges:
0
View larger
pre-miRNA
AATATGATTGCTATTATACTATTTACTACTTCCTTCGTTTCATATTA
TAAGACTTTCTGGCATTGCCT
ACATTCATTAACATCTATATGAATATGG
GCAA
TGCTAGAAAGTCTTATA
ACCTGAAACGGAGGTAGTAGTTAAAGTATATGCCTTAGAAACTA
dot-bracket secondary structure
.........((...((((((.((.((((((.(((((((((((..(((
(((((((((((((((((((((
(.((((((..........)))))).)))
))))
)))))))))))))))))
)..))))))))))).)))))).)))))))).))...........
SIMILARITIES
miRBase
osa-MIR819k
:
2e-31
PMRD
osa-miR819k
:
2e-31
microPC
miR819
:
3e-24
UniProt
no hits
RFAM
MIR1122: 8e-34
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record